Terminally Chill: Getting Comfortable with the Command Line
The command line can feel intimidating when you’re new. But trust me, it doesn’t have to be. In fact, getting comfortable with the terminal is one of the bes...
Posts by Tag
- getting started 3
- bioinformatics 2
- tools 2
- ngs 2
- long-read 2
- short-read 2
- assembly 2
- reference 2
- introduction 1
- computational biology 1
- hardware 1
- conda 1
- mamba 1
- docker 1
- environment 1
- bash 1
- terminal 1
- linux 1
- productivity 1
- sequencing 1
- mapping 1
- genome 1
- de-novo 1
- genome assembly 1
- variant calling 1
getting started
Conda? Mamba? Docker? Figuring Out Package Management Without Losing Your Mind
Ever tried installing a tool, only to break your entire setup in the process due to conflicting dependencies? Luckily, you don’t need to suffer. Let’s talk a...
So You Wanna Do Bioinformatics?
Thinking of diving into bioinformatics but not sure if your laptop is up to the task? You’re not alone. Let’s talk about what kind of setup you actually need...
bioinformatics
Mapping with Confidence: A Beginner’s Guide to Reference-Based Assembly
When you have a good reference genome, reference-based assembly is often the most efficient way to make sense of your sequencing data. In this post, we’ll wa...
So You Wanna Do Bioinformatics?
Thinking of diving into bioinformatics but not sure if your laptop is up to the task? You’re not alone. Let’s talk about what kind of setup you actually need...
tools
Conda? Mamba? Docker? Figuring Out Package Management Without Losing Your Mind
Ever tried installing a tool, only to break your entire setup in the process due to conflicting dependencies? Luckily, you don’t need to suffer. Let’s talk a...
So You Wanna Do Bioinformatics?
Thinking of diving into bioinformatics but not sure if your laptop is up to the task? You’re not alone. Let’s talk about what kind of setup you actually need...
ngs
Reference-Based vs De Novo Assembly: Choosing the Right Approach
Genome assembly can be tackled in two main ways: aligning reads to a reference genome, or building an assembly from scratch (de novo). Both strategies are po...
Short Reads vs Long Reads: What’s the Difference and Why It Matters
Not all sequencing technologies are created equal. If you’ve ever wondered why some people swear by Illumina and others rave about Oxford Nanopore or PacBio,...
long-read
Reference-Based vs De Novo Assembly: Choosing the Right Approach
Genome assembly can be tackled in two main ways: aligning reads to a reference genome, or building an assembly from scratch (de novo). Both strategies are po...
Short Reads vs Long Reads: What’s the Difference and Why It Matters
Not all sequencing technologies are created equal. If you’ve ever wondered why some people swear by Illumina and others rave about Oxford Nanopore or PacBio,...
short-read
Reference-Based vs De Novo Assembly: Choosing the Right Approach
Genome assembly can be tackled in two main ways: aligning reads to a reference genome, or building an assembly from scratch (de novo). Both strategies are po...
Short Reads vs Long Reads: What’s the Difference and Why It Matters
Not all sequencing technologies are created equal. If you’ve ever wondered why some people swear by Illumina and others rave about Oxford Nanopore or PacBio,...
assembly
Reference-Based vs De Novo Assembly: Choosing the Right Approach
Genome assembly can be tackled in two main ways: aligning reads to a reference genome, or building an assembly from scratch (de novo). Both strategies are po...
Short Reads vs Long Reads: What’s the Difference and Why It Matters
Not all sequencing technologies are created equal. If you’ve ever wondered why some people swear by Illumina and others rave about Oxford Nanopore or PacBio,...
reference
Mapping with Confidence: A Beginner’s Guide to Reference-Based Assembly
When you have a good reference genome, reference-based assembly is often the most efficient way to make sense of your sequencing data. In this post, we’ll wa...
Reference-Based vs De Novo Assembly: Choosing the Right Approach
Genome assembly can be tackled in two main ways: aligning reads to a reference genome, or building an assembly from scratch (de novo). Both strategies are po...
introduction
So You Wanna Do Bioinformatics?
Thinking of diving into bioinformatics but not sure if your laptop is up to the task? You’re not alone. Let’s talk about what kind of setup you actually need...
computational biology
So You Wanna Do Bioinformatics?
Thinking of diving into bioinformatics but not sure if your laptop is up to the task? You’re not alone. Let’s talk about what kind of setup you actually need...
hardware
So You Wanna Do Bioinformatics?
Thinking of diving into bioinformatics but not sure if your laptop is up to the task? You’re not alone. Let’s talk about what kind of setup you actually need...
conda
Conda? Mamba? Docker? Figuring Out Package Management Without Losing Your Mind
Ever tried installing a tool, only to break your entire setup in the process due to conflicting dependencies? Luckily, you don’t need to suffer. Let’s talk a...
mamba
Conda? Mamba? Docker? Figuring Out Package Management Without Losing Your Mind
Ever tried installing a tool, only to break your entire setup in the process due to conflicting dependencies? Luckily, you don’t need to suffer. Let’s talk a...
docker
Conda? Mamba? Docker? Figuring Out Package Management Without Losing Your Mind
Ever tried installing a tool, only to break your entire setup in the process due to conflicting dependencies? Luckily, you don’t need to suffer. Let’s talk a...
environment
Conda? Mamba? Docker? Figuring Out Package Management Without Losing Your Mind
Ever tried installing a tool, only to break your entire setup in the process due to conflicting dependencies? Luckily, you don’t need to suffer. Let’s talk a...
bash
Terminally Chill: Getting Comfortable with the Command Line
The command line can feel intimidating when you’re new. But trust me, it doesn’t have to be. In fact, getting comfortable with the terminal is one of the bes...
terminal
Terminally Chill: Getting Comfortable with the Command Line
The command line can feel intimidating when you’re new. But trust me, it doesn’t have to be. In fact, getting comfortable with the terminal is one of the bes...
linux
Terminally Chill: Getting Comfortable with the Command Line
The command line can feel intimidating when you’re new. But trust me, it doesn’t have to be. In fact, getting comfortable with the terminal is one of the bes...
productivity
Terminally Chill: Getting Comfortable with the Command Line
The command line can feel intimidating when you’re new. But trust me, it doesn’t have to be. In fact, getting comfortable with the terminal is one of the bes...
sequencing
Short Reads vs Long Reads: What’s the Difference and Why It Matters
Not all sequencing technologies are created equal. If you’ve ever wondered why some people swear by Illumina and others rave about Oxford Nanopore or PacBio,...
mapping
Short Reads vs Long Reads: What’s the Difference and Why It Matters
Not all sequencing technologies are created equal. If you’ve ever wondered why some people swear by Illumina and others rave about Oxford Nanopore or PacBio,...
genome
Reference-Based vs De Novo Assembly: Choosing the Right Approach
Genome assembly can be tackled in two main ways: aligning reads to a reference genome, or building an assembly from scratch (de novo). Both strategies are po...
de-novo
Reference-Based vs De Novo Assembly: Choosing the Right Approach
Genome assembly can be tackled in two main ways: aligning reads to a reference genome, or building an assembly from scratch (de novo). Both strategies are po...
genome assembly
Mapping with Confidence: A Beginner’s Guide to Reference-Based Assembly
When you have a good reference genome, reference-based assembly is often the most efficient way to make sense of your sequencing data. In this post, we’ll wa...
variant calling
Mapping with Confidence: A Beginner’s Guide to Reference-Based Assembly
When you have a good reference genome, reference-based assembly is often the most efficient way to make sense of your sequencing data. In this post, we’ll wa...